level0
topic_0: ['data', 'sequencing', 'analysis', 'cells', 'cell', 'dna', 'cancer', 'methods', 'used', 'gene']
topic_1: ['reads', 'genome', 'read', 'data', 'alignment', 'reference', 'variant', 'sequencing', 'genomes', 'coverage']
level1
topic_0: ['sequencing', 'dna', 'cancer', 'resistance', 'gene', 'ngs', 'genes', 'using', 'detection', 'protein']
topic_1: ['variant', 'kraken', 'variants', 'regions', 'normalization', 'benchmark', 'species', 'scone', 'snps', 'wgs']
topic_2: ['reads', 'genome', 'read', 'alignment', 'assembly', 'coverage', 'genomes', 'reference', 'contigs', 'graph']
topic_3: ['data', 'analysis', 'cell', 'cells', 'methods', 'metagenomic', 'used', 'expression', 'nat', 'metagenomics']
level2
topic_0: ['alignment', 'bioinformatics', 'tools', 'algorithms', 'umap', 'mapping', 'short', 'length', 'algorithm', 'fuzzy']
topic_1: ['genomes', 'contigs', 'lineage', 'contig', 'tree', 'assemblies', 'supplementary', 'assigned', 'samples', 'grapetree']
topic_2: ['cell', 'cells', 'methods', 'expression', 'clustering', 'number', 'dataset', 'model', 'clusters', 'scvis']
topic_3: ['variant', 'variants', 'ngs', 'wgs', 'normalization', 'scone', 'calling', 'depth', 'performance', 'lrs']
topic_4: ['mash', 'sketch', 'aligner', 'fastp', 'hash', 'mappings', 'quality', 'size', 'mapq', 'file']
topic_5: ['species', 'learning', 'tumor', 'detection', 'deep', 'genomics', 'liquid', 'circulating', 'pubmed', 'patients']
topic_6: ['metagenomic', 'metagenomics', 'microbiome', 'args', 'benchmark', 'regions', 'resistance', 'microbial', 'usa', 'pubmed']
topic_7: ['assembly', 'coverage', 'graph', 'set', 'illumina', 'distance', 'bias', 'forensic', 'ajb', 'ion']
level3
topic_0: ['variant', 'read', 'genome', 'aligner', 'resfinder', 'mappings', 'resistance', 'mapq', 'reference', 'reads']
topic_1: ['genomes', 'assembly', 'reads', 'using', 'genome', 'mash', 'benchmark', 'regions', 'variants', 'coverage']
topic_2: ['data', 'clustering', 'cell', 'cells', 'normalization', 'genes', 'methods', 'expression', 'number', 'used']
topic_3: ['data', 'coverage', 'learning', 'genome', 'deep', 'bias', 'sequencing', 'genomics', 'illumina', 'human']
topic_4: ['read', 'alignment', 'reads', 'genome', 'reference', 'sequencing', 'algorithms', 'bioinformatics', 'dna', 'scone']
topic_5: ['sequencing', 'species', 'data', 'wgs', 'reads', 'lrs', 'variant', 'depth', 'using', 'kraken']
topic_6: ['umap', 'data', 'usa', 'university', 'fuzzy', 'author', 'set', 'qiime', 'manuscript', 'manifold']
topic_7: ['analysis', 'data', 'cell', 'cells', 'methods', 'sequencing', 'gatk', 'expression', 'gene', 'genome']
topic_8: ['snps', 'drosophila', 'variant', 'amino', 'megares', 'gene', 'snpeff', 'variants', 'args', 'protein']
topic_9: ['cells', 'data', 'args', 'resistance', 'scvis', 'resistome', 'cell', 'dataset', 'bipolar', 'clusters']
topic_10: ['cancer', 'dna', 'data', 'sequencing', 'analysis', 'tumor', 'detection', 'pubmed', 'liquid', 'circulating']
topic_11: ['reads', 'graph', 'assembly', 'ajb', 'contigs', 'bruijn', 'distance', 'spades', 'genome', 'edge']
topic_12: ['metagenomic', 'analysis', 'data', 'sequencing', 'metagenomics', 'microbiome', 'used', 'microbial', 'dna', 'pubmed']
topic_13: ['data', 'nat', 'methods', 'integration', 'analysis', 'cell', 'reduction', 'sequencing', 'cells', 'joint']
topic_14: ['sequencing', 'dna', 'ngs', 'cancer', 'analysis', 'data', 'genome', 'forensic', 'technology', 'variant']
topic_15: ['kraken', 'reference', 'data', 'sequences', 'genes', 'used', 'lineage', 'sequence', 'genomes', 'genome']